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Dept. of Microbiology and Fermentation Technology (12025)
- Administration (3)
- CFTRI Resource Centres (320)
  - Hyderabad (109)
  - Lucknow (27)
  - Mumbai (15)
- Central Instrumentation Facility Services (21)
- Construction and Civil Maintenance (1)
- Dept. of Biochemistry (2215)
- Dept. of Lipid Science (81)
- Director's Office (18)
- Electrical Department (5)
- Fermentation Technology and Bioengineering (778)
- Flour Milling Bakery and Confectionary Technology (659)
- Food Engineering (905)
- Food Microbiology (945)
- Food Packaging Technology (351)
- Food Protectants and Infestation Control (703)
- Food Safety Analytical Quality Control Lab (259)
- Fruit and Vegetable Technology (1022)
- Grain Science and Technology (765)
- Human Resource Development (341)
- Information and Publicity (1)
- Library (FOSTIS) (14)
- Lipid Science and Traditional Foods (551)
- Meat Fish and Poultry Technology (563)
- Molecular Nutrition (61)
- Planning and Monitoring Cell (16)
- Plant Cell Biotechnology (616)
- Plantation Products Spices and Flavour Technology (847)
- Protein Chemistry and Technology (766)
- Sensory Science (211)
- Technology Transfer and Business Development (25)